Hi
I had this issue too did not like the sudden click from hard drive did not sound good. What did was run hdparm in a shutdown script now it powers down gracefully. Make a script file with the line
hdparm -y /dev/sda1
Your hard drive may not be sda1. Run blkid in ssh to see dev name for yours. (Usually is sda1 with one hard drive attached)
And place it in /lib/systemd/system-shutdown
Hope this helps