No remote control after lastest update

So I figured out what the problem was ( in my case anyway…) I’ve always had my PS3,my PI 2 and my PC connected to my TV. Same day I updated my PI , I upgraded my PC with a GPU. Now if I plug the HDMI cable on my motherboard ( as it always was) everything works fine. BUT if I connect my PC through the GPU, the remote stops working… weird problem… Hope this helps a bit…