Update error after January update

Martor · 15 February 2018 10:18

Hi all,

after successful January 2018 update running on stretch I have noticed following error when checking updates:

Hit:11 http://security.debian.org stretch/updates/non-free armhf Packages
Err:12 http://security.debian.org stretch/updates/non-free Translation-en
BZ2_bzread: /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 Read error (-5: DATA_ERROR_MAGIC)
Fetched 495 kB in 3s (162 kB/s)
Reading package lists… Error!
E: Failed to fetch http://security.debian.org/dists/stretch/updates/non-free/i18n/Translation-en BZ2_bzread: /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 Read error (-5: DATA_ERROR_MAGIC)
E: Some index files failed to download. They have been ignored, or old ones used instead.
E: Splitting of file /var/lib/apt/lists/security.debian.org_dists_stretch_updates_InRelease failed as it doesn’t contain all expected parts 0 1 0
E: The package lists or status file could not be parsed or opened.

Tried apt-get clean, update but still failing on this.

Found this
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=880170
but not sure if this is a topic.

Please does anyone has the same trouble?
Any hints what I should check or set?

Cheers!
Martin

Tom_Doyle · 15 February 2018 11:23

Hi,

Please try:

sudo rm /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2

Then sudo apt-get update.

Thanks Tom.

Martor · 15 February 2018 12:07

Hi Tom,

/var/lib/apt/lists/partial/ was already empty and is still empty.
Already tried.

Thanks a lot,
Martin

Tom_Doyle · 15 February 2018 14:17

Hi,

Please provide the output of:

ls -lah /var/lib/apt/lists/partial/

Thanks Tom.

Martor · 15 February 2018 18:14

I am sorry Tom, you were right, it was not empty, please see actions and outputs.

Thank you, Martin

drwx------ 2 _apt root 4.0K Feb 15 19:08 .
drwxr-xr-x 3 root root 4.0K Feb 15 19:08 …
-rw-r–r-- 1 root root 62K Feb 15 09:31 security.debian.org_dists_stretch_updates_InRelease
-rw-r–r-- 1 root root 1.8K Feb 7 22:51 security.debian.org_dists_stretch_updates_contrib_binary-armhf_Packages.xz
-rw-r–r-- 1 root root 1.8K Feb 7 22:51 security.debian.org_dists_stretch_updates_contrib_i18n_Translation-en.bz2
-rw-r–r-- 1 root root 291K Feb 15 07:53 security.debian.org_dists_stretch_updates_main_binary-armhf_Packages.xz
-rw-r–r-- 1 root root 129K Feb 14 22:39 security.debian.org_dists_stretch_updates_main_i18n_Translation-en.bz2
lrwxrwxrwx 1 root root 91 Feb 15 19:08 security.debian.org_dists_stretch_updates_non-free_binary-armhf_Packages.xz -> /var/lib/apt/lists/security.debian.org_dists_stretch_updates_non-free_binary-armhf_Packages
lrwxrwxrwx 1 root root 89 Feb 15 19:08 security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 -> /var/lib/apt/lists/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en
root@osmc:/home/osmc# rm /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2
root@osmc:/home/osmc# ls -lah /var/lib/apt/lists/partial/
total 508K
drwx------ 2 _apt root 4.0K Feb 15 19:09 .
drwxr-xr-x 3 root root 4.0K Feb 15 19:08 …
-rw-r–r-- 1 root root 62K Feb 15 09:31 security.debian.org_dists_stretch_updates_InRelease
-rw-r–r-- 1 root root 1.8K Feb 7 22:51 security.debian.org_dists_stretch_updates_contrib_binary-armhf_Packages.xz
-rw-r–r-- 1 root root 1.8K Feb 7 22:51 security.debian.org_dists_stretch_updates_contrib_i18n_Translation-en.bz2
-rw-r–r-- 1 root root 291K Feb 15 07:53 security.debian.org_dists_stretch_updates_main_binary-armhf_Packages.xz
-rw-r–r-- 1 root root 129K Feb 14 22:39 security.debian.org_dists_stretch_updates_main_i18n_Translation-en.bz2
lrwxrwxrwx 1 root root 91 Feb 15 19:08 security.debian.org_dists_stretch_updates_non-free_binary-armhf_Packages.xz -> /var/lib/apt/lists/security.debian.org_dists_stretch_updates_non-free_binary-armhf_Packages
root@osmc:/home/osmc# exit
exit
osmc@osmc:~$ sudo apt-get clean
osmc@osmc:~$ sudo apt-get update
Get:1 ://security.debian.org stretch/updates InRelease [63.0 kB]
Ign:2 ://ftp.debian.org/debian stretch InRelease
Hit:4 ://ftp.debian.org/debian stretch-updates InRelease
Hit:5 ://ftp.debian.org/debian stretch Release
Hit:3 ://ftp.fau.de/osmc/osmc/apt stretch InRelease
Get:6 ://security.debian.org stretch/updates/main armhf Packages [297 kB]
Get:7 ://security.debian.org stretch/updates/main Translation-en [132 kB]
Get:8 ://security.debian.org stretch/updates/contrib armhf Packages [1784 B]
Get:9 ://security.debian.org stretch/updates/contrib Translation-en [1759 B]
Hit:10 ://security.debian.org stretch/updates/non-free armhf Packages
Hit:11 ://security.debian.org stretch/updates/non-free Translation-en
Ign:10 ://security.debian.org stretch/updates/non-free armhf Packages
Ign:11 ://security.debian.org stretch/updates/non-free Translation-en
Hit:10 ://security.debian.org stretch/updates/non-free armhf Packages
Err:11 ://security.debian.org stretch/updates/non-free Translation-en
BZ2_bzread: /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 Read error (-5: DATA_ERROR_MAGIC)
Fetched 495 kB in 2s (170 kB/s)
Reading package lists… Error!
E: Failed to fetch ://security.debian.org/dists/stretch/updates/non-free/i18n/Translation-en BZ2_bzread: /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 Read error (-5: DATA_ERROR_MAGIC)
E: Some index files failed to download. They have been ignored, or old ones used instead.
E: Splitting of file /var/lib/apt/lists/security.debian.org_dists_stretch_updates_InRelease failed as it doesn’t contain all expected parts 0 1 0
E: The package lists or status file could not be parsed or opened.

Martor · 15 February 2018 18:18

I have already processed the removal

rm /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2

Martor · 15 February 2018 18:18

Originally got this>

root@osmc:/home/osmc# ls -lah /var/lib/apt/lists/partial/
total 512K
drwx------ 2 _apt root 4.0K Feb 15 19:08 .
drwxr-xr-x 3 root root 4.0K Feb 15 19:08 …
-rw-r–r-- 1 root root 62K Feb 15 09:31 security.debian.org_dists_stretch_updates_InRelease
-rw-r–r-- 1 root root 1.8K Feb 7 22:51 security.debian.org_dists_stretch_updates_contrib_binary-armhf_Packages.xz
-rw-r–r-- 1 root root 1.8K Feb 7 22:51 security.debian.org_dists_stretch_updates_contrib_i18n_Translation-en.bz2
-rw-r–r-- 1 root root 291K Feb 15 07:53 security.debian.org_dists_stretch_updates_main_binary-armhf_Packages.xz
-rw-r–r-- 1 root root 129K Feb 14 22:39 security.debian.org_dists_stretch_updates_main_i18n_Translation-en.bz2
lrwxrwxrwx 1 root root 91 Feb 15 19:08 security.debian.org_dists_stretch_updates_non-free_binary-armhf_Packages.xz -> /var/lib/apt/lists/security.debian.org_dists_stretch_updates_non-free_binary-armhf_Packages
lrwxrwxrwx 1 root root 89 Feb 15 19:08 security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 -> /var/lib/apt/lists/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en

Martor · 15 February 2018 18:26

Did exactly what you proposed earlier, like:

rm /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2

Then sudo apt-get update.

RESULT is:

Ign:2 ://ftp.debian.org/debian stretch InRelease
Get:1 ://security.debian.org stretch/updates InRelease [63.0 kB]
Hit:4 ://ftp.debian.org/debian stretch-updates InRelease
Hit:5 ://ftp.debian.org/debian stretch Release
Hit:3 ://ftp.fau.de/osmc/osmc/apt stretch InRelease
Get:6 ://security.debian.org stretch/updates/main armhf Packages [297 kB]
Get:7 ://security.debian.org stretch/updates/main Translation-en [132 kB]
Get:8 ://security.debian.org stretch/updates/contrib armhf Packages [1784 B]
Get:9 ://security.debian.org stretch/updates/contrib Translation-en [1759 B]
Hit:11 ://security.debian.org stretch/updates/non-free Translation-en
Hit:10 ://security.debian.org stretch/updates/non-free armhf Packages
Ign:11 ://security.debian.org stretch/updates/non-free Translation-en
Ign:10 ://security.debian.org stretch/updates/non-free armhf Packages
Err:11 ://security.debian.org stretch/updates/non-free Translation-en
BZ2_bzread: /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 Read error (-5: DATA_ERROR_MAGIC)
Fetched 63.0 kB in 3s (19.5 kB/s)
Reading package lists… Error!
E: Failed to fetch http://security.debian.org/dists/stretch/updates/non-free/binary-armhf/Packages.gz lzma_read: Read error (7)
E: Failed to fetch http://security.debian.org/dists/stretch/updates/non-free/i18n/Translation-en BZ2_bzread: /var/lib/apt/lists/partial/security.debian.org_dists_stretch_updates_non-free_i18n_Translation-en.bz2 Read error (-5: DATA_ERROR_MAGIC)
E: Some index files failed to download. They have been ignored, or old ones used instead.
E: Splitting of file /var/lib/apt/lists/security.debian.org_dists_stretch_updates_InRelease failed as it doesn’t contain all expected parts 0 1 0
E: The package lists or status file could not be parsed or opened.

PLEASE NOTE: I have removed all the HTTP to be able to post this.

Tom_Doyle · 15 February 2018 18:28

Hi,

Could you please provide logs please please?

grab-logs -A

Thanks Tom.

Martor · 15 February 2018 18:30

Sure Tome, here it is
https://paste.osmc.tv/tebenoluva

Thanks, Martin

dillthedog · 15 February 2018 19:12

Looks like either a problem with the card or with the Pi:

Feb 14 02:57:08 osmc kernel: mmc0: timeout waiting for hardware interrupt.
...
Feb 14 02:57:08 osmc kernel: mmc0: cmd op 24 arg 0x1fd7f flags 0xb5 - resp 00000900 00000000 00000000 00000000, err 0
Feb 14 02:57:08 osmc kernel: mmc0: data blocks 1 blksz 200 - err 0
Feb 14 02:57:08 osmc kernel: mmc0: =========== REGISTER DUMP ===========
Feb 14 02:57:08 osmc kernel: mmc0: SDCMD  0x00004098
Feb 14 02:57:08 osmc kernel: mmc0: SDARG  0x0001fd7f
Feb 14 02:57:08 osmc kernel: mmc0: SDTOUT 0x017d7840
Feb 14 02:57:08 osmc kernel: mmc0: SDCDIV 0x00000003
Feb 14 02:57:08 osmc kernel: mmc0: SDRSP0 0x00000900
Feb 14 02:57:08 osmc kernel: mmc0: SDRSP1 0x0000182e
Feb 14 02:57:08 osmc kernel: mmc0: SDRSP2 0xffffffff
Feb 14 02:57:08 osmc kernel: mmc0: SDRSP3 0x0002400f
Feb 14 02:57:08 osmc kernel: mmc0: SDHSTS 0x00000081
Feb 14 02:57:08 osmc kernel: mmc0: SDVDD  0x00000001
Feb 14 02:57:08 osmc kernel: mmc0: SDEDM  0x00010801
Feb 14 02:57:08 osmc kernel: mmc0: SDHCFG 0x0000050e
Feb 14 02:57:08 osmc kernel: mmc0: SDHBCT 0x00000200
Feb 14 02:57:08 osmc kernel: mmc0: SDHBLC 0x00000001
Feb 14 02:57:08 osmc kernel: mmc0: ===========================================
Feb 14 02:57:08 osmc kernel: mmcblk0: error -110 transferring data, sector 130431, nr 1, cmd response 0x900, card status 0x0

repeated multipe times. (More likely to be a bad card.)

Also, the bzip2 package is missing, possibly because of a bad card.

Martor · 15 February 2018 19:16

Thanks dillthedog,

yes, got some troubles with the SD card, but did fresh installation and of the December version and then upgraded to January. If this is the root cause I will reinstall to new one or at least properly formatted.

Thanks a lot for checking the issue.

Kind regards,
Martin

dillthedog · 15 February 2018 19:21

As I said, it could be an issue with the Pi but that’s the less-likely option.

Out of interest, does the file /bin/bzip2 exist?

Martor · 15 February 2018 19:34

[quote=“dillthedog, post:13, topic:70853”]
/bin/bzip2
[/

Just out of interest dillthedog, bzip2 is not available ;(

Martor · 15 February 2018 19:34

can I install it by apt-get install?

dillthedog · 15 February 2018 19:44

What’s stopping you?

sudo apt-get install bzip2

Martor · 15 February 2018 19:48

unfortunately this ;(

osmc@osmc:~$ sudo apt-get install bzip2
Reading package lists… Error!
E: Splitting of file /var/lib/apt/lists/security.debian.org_dists_stretch_updates_InRelease failed as it doesn’t contain all expected parts 0 1 0
E: The package lists or status file could not be parsed or opened.

dillthedog · 15 February 2018 20:03

I had a sneaking suspicion that you might see something like this…

Realistically, back up you settings as best you can and reinstall OSMC on a fresh card.

Martor · 16 February 2018 20:51

Thanks a lot, will do so.

Martor · 16 February 2018 21:57

Hi Tom, Hi dillthedog,

so I have finally SOLVED my issue and guess what, without reinstalling OSMC

I have installed bzip2 via deb files using libbz2-1.0_1.0.6-8.1_armhf.deb and bzip2_1.0.6-8.1_armhf.deb
I have executed following commands:

sudo -i
apt-get clean
cd /var/lib/apt
mv lists lists.old
mkdir -p lists/partial
apt-get clean
apt-get update

… and voila, everything is back to normal

Thank you for all your support and have a good day.

Cheers,
Martin